PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00707.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 292aa    MW: 33136.3 Da    PI: 7.4363
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00707.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.8e-161462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl
  Rsa1.0_00707.1_g00013.1 14 RGPWSPEEDAKLKDYIEKQGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62
                             89*********************************************97 PP

2Myb_DNA-binding40.75.5e-1369111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +++eEd ++  +++  G++ W+ Ia+++  gRt++++k++w++
  Rsa1.0_00707.1_g00013.1  69 GDFSEEEDNIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111
                              789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.148962IPR017930Myb domain
SuperFamilySSF466891.47E-2611109IPR009057Homeodomain-like
SMARTSM007172.6E-111364IPR001005SANT/Myb domain
PfamPF002492.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231569IPR009057Homeodomain-like
CDDcd001678.65E-81662No hitNo description
PROSITE profilePS5129421.35563117IPR017930Myb domain
SMARTSM007172.1E-1167115IPR001005SANT/Myb domain
PfamPF002495.1E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2370118IPR009057Homeodomain-like
CDDcd001675.50E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN  60
YLRPNIRHGD FSEEEDNIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT  120
MAPPPPHQLV AIASSSLSPS SSHYNMTNNL PPYNPTISTN QLISPHLSPH QEMMMTMMDQ  180
QQQQLLYKEA MDSLVNSPNS NKLIMSHQED SHAQSTNKGI MLLSDVRSGS STTSTVTRVK  240
MEQHDHHHEE RSMQDYGMEE INHLISSSCT SSSSNSLWFD ENKTEDTFML YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6701180.0KJ670118.1 Brassica napus MYB transcription factor 38 (MYB38.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669891.11e-180PREDICTED: transcription factor RAX2-like
SwissprotQ9SJL71e-136RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A078H3J01e-180A0A078H3J0_BRANA; BnaC04g08340D protein
STRINGBra005234.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-131MYB family protein